Hello everyone! It’s a been over a month since my project began on studying the diet and attempting taste manipulation of the Drosophila melanogaster.
Before my experiments could begin I faced many software and hardware issues. The flyPAD itself is an extremely thin 0.6mm PCB board so every slight bend of it can result in a breaking of the soldered connections with each channel’s circuits.
I transfer flies by sucking them up…don’t worry there’s a cotton stopper. Human Sips.
In order to change my flies’ taste perception, the light-sensitive proteins which were inserted into their ‘sweet’ tasting neurons had to be stimulated by an intense red light. For a proper response, this light stimulation has to happen almost exactly when the flies take sips of the target food. To make this happen, a code was programmed into Bonsai so that an LED is turned on nearly instantaneously to when food is touched by a fly, triggered by a change in capacitance between the electrodes. This is how the flies’ taste neurons are activated at the same instant they sip certain foods to influence their food choice preference.
The instant the fly’s proboscis (mouth) touches food, intense red light shines
To get to the finalized rig I use today, I experienced firsthand just how much debugging and problem-solving is involved in research. Below is a pictorial formula of how I got to my final experimental setup:
Got my flyPAD
Integrate circuit and solder under a microscope… this is what was breaking every time the .6mm boar bent… whch was all the time
Creating circuit and code for LEDs to sink up with each channel
I soldered a shield for easy LED plugin
LEDs set up with flyPAD
soldered LEDs to their drivers, which increase the light intensity
Another arduino programmed to pulse 100 Hz light to give flies recovery time of 900 ms
Painted acrylic to avoid unwanted light penetration of neighboring LEDs
The bonsai workflow for LED stimulation
Over many hours of adjusting my setup and learning how to insert the food, I finally got everything working so that experiments could get underway.
To see if the flies’ taste can be changed, I had to determine what their natural food preference was. I chose banana and avocado to compare. The cumulative number of sips showed banana was preferred over avocado, as avocados have almost no sugar in them.
To see if food choice preference can be altered, LEDs were activated upon contact with avocado. This fired the gr5a sweet neurons in the flies.
As predicted, the light stimulation successfully activated the flies’ sweet neurons to alter what they perceive as sweet tasting.
To verify these results, I ran a positive and negative control. The positive, showing the desired effect which is expected from the independent variable, was the proboscis extension (seen with the green arrow) from a gr5a fly upon stimulation from the 625nm red LED light.
As for the negative control, which does not produce the desired outcome of the experiment, I put gr5a flies that had not been feeding on all trans-retinal, under the same LED treatment targeted on avocado. All trans-retinal must be ingested to activate the proteins in the flies’ neurons, otherwise light stimulation will not fire the neurons. As expected, these flies still preferred the more sugary banana over the bland avocado.
Now that I know that the alteration of Drosophila taste preference is possible, I plan to study the nutrients within the flies’ diet.
It’s easy to eat sugar, but when offered your favourite sweet snack and a healthy food, it’s hard to eat what you know is better for you. I will create this scenario for my flies. Specifically, I am interested to see if the flies will eat protein after being deprived of it, even when a tasty, sugary apple is also up for grabs.
When deprived of protein, it has been found in the past that females will eat more protein when offered it again as opposed to males since they have to produce eggs. I want to see if this is still the case with natural foods rich in protein. I hypothesize that the flies will still prefer to eat a more sugary food as opposed to the nutrient they are deprived of. If this is the case, I will use optogenetics once again to see if I can make them eat the food they require the most. Are flies’ instincts to eat the nutrients they require stronger than their pickiness of taste? This is an interesting comparison to humans – as so many of us are more than willing to indulge in decadent desserts rather than eating our veggies any day of the week. Will optogenetics one day make its way into the human realm to revolutionize eating and health forever?
Thank you for taking a look at my post! I can’t wait to see what response I get out of my flies in the near future.
Angling in Halifax
My name is Spencer and I just finished my freshman year at Dalhousie University in Halifax, Canada (yes, where the maple syrup and igloos are). I’ll be studying Neuroscience and Immunology there for the next three years.
I’m originally from Vancouver but ended up all the way on the other coast to study in Halifax. Having relatives in Florida and a lot of friends on the west coast, I’ve visited the US quite a bit but have never lived here. I am thrilled to be in Ann Arbor this summer interning with Backyard Brains!
Spenc: Coast to Coast
In the two weeks I’ve been here I’ve already had some awesome experiences. I love the food here, playing basketball at local outdoor courts, and the trees and streams that make the city vivacious. It takes me 20 minutes to bike to work, which might sound worse than what I get to look at each day:
My Morning Commute
Isn’t summer a great time? Sun, flowers, ripe fruit, and…those pesky fruit flies are all over them… Fruit flies may be tiny and annoying, but they happen to be one of the most important model organisms for the past 100 years. In spite of over a century of research, the feeding behavior of fruit flies, specifically the Drosophila melanogaster, has not been fully understood. Knowing how animals feed gives us insight into things like how they learn, reproduce, and physically function. Unfortunately, the Drosophila is so small and moves so quickly that its rapid sips of food cannot be caught with the human eye.
Fruit.. Fly… Fruitfly. (Images courtesy a Google Images search)
Fingertip for Scale
That’s why Dr. Pavel Itskov helped create a device called the flyPAD (proboscis activity detector) to measure how often the flies take sips of food with an accuracy of 100 samples per second. The flyPAD is so accurate because it uses capacitive sensors, the same type of technology iPads use to track touch responses. With food on one electrode and a fly on the other, the number and duration of sips the fly takes can be recorded and studied. I got my hands on one of these new gadgets this summer to study what natural foods Drosophila prefer to eat, what nutrients they require, and see if I can alter their food preference with neural stimulation.
The FlyPad in its Full Glory
To see what natural foods my flies prefer to eat, I will offer them a variety of commonly liked and disliked foods to see which ones they visit and eat from more. I am interested to see if the food choice preferences they make are based on the macronutrients (proteins, carbohydrates, fats) which are crucial to their diet. I will deprive flies of specific nutrients to see if, when offered those again, they spend more time eating to regain those nutrients. One application of this is to test the dietary requirements for reproduction. An example of this is to see if adult female flies eat more protein than males since they produce eggs and if virgin flies (which don’t make eggs) eat little protein. I am still doing research into more of such hypotheses to test, as well as the effect which ripe or rotten fruit has on their eating.
How the FlyPad Works
How the FlyPad works
After figuring out what foods my flies like, would it be possible to override their decision-making abilities and alter what they perceive as tasting good or bad? Well, I will be putting this question to the test with optogenetics – a tool which can activate neurons with light stimulation.
Light Sensitive Ion Channels Activate Neurons
An Example of a FlyPad Recording
I visited a local fly lab at the University of Michigan to order genetically modified flieswith the opsin ReaChR in their gr5a and gr66a neurons. These neurons control the flies’ gustatory reception – what they perceive as tasting sweet (gr5a) and bitter (gr66a). Through stimulation of ReaChR with light at certain frequencies, I should be able to activate these taste responses to give the flies virtual taste realities. If a fly loves banana but I activate its bitter taste receptors each time it tries to eat it, they should learn to stay away from banana. Likewise, I will try to make them love eating the foods they once abhorred through stimulation of their ‘sweet’ neurons. I am excited to see how Drosophila learn and remember, by measuring if their food choice preferences can be changed after multiple days of stimulation.
How powerful is optogenetics? Can I alter the free will of what Drosophila choose to eat? This is what I aim to discover in the upcoming weeks! Stay tuned.
From left to right: Top: Greg Gage (Not a Fellow), Zachary, Jaimie, Spencer, Nathan, Ilya Bottom: Joud, Christy, Haley
It’s early on a warm Ann Arbor morning and the office is buzzing with excitement! Our Summer 2017 research fellows are here! Today, our fellows are getting to know the staff and space at Backyard Brains, but more importantly, they’re planning, because for the next ten weeks they will be working on neuroscience and engineering research projects. The projects include work with Squids, Songbirds, Dragonflies, Mosquitoes, EEG recordings, and Electric Fish. The fellows work to create inexpensive, DIY methodology (the BYB way) to tackle their research problems and then present their findings at a poster presentation and in a journal publication. The fellows also develop experimental-grade versions of their projects so that other students and teachers can perform the experiments themselves!
Meet the Fellows, See the Projects
The fellows are off to a great start! Check out their blog posts introducing their projects:
The team has been working hard to bring their projects to life. Check out these blog posts on their rig construction and data collection efforts!
After a morning of introductions and orientation, we took a quick break for lunch, then hurried back to the office to perform some recordings. For many of our fellows, working with our SpikerBoxes was their first opportunity to perform real neuron recordings! This is just the beginning of a summer of hands on science, rapid prototyping, troubleshooting, and data collection.
Quick Italian Buffet for Lunch
Recording from Earthworm neurons. Spikes!
As part of the fellowship, the students will be keeping you updated with frequent blog posts. These posts are a great window in the world of research! From start to finish, you can follow along with our fellows as they experience the triumphs and pitfalls of scientific inquiry.
You’ll be hearing a lot about our fellows and their projects for the next ten weeks. They’re excited to introduce themselves and their projects to you soon. Keep an eye out here, on our Facebook page, and Twitter for project updates and more!