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Backyard Brains Returns to the Nature Neuroscience Podcast, unveils Optogenetics Prototype

Coming to the Society for Neuroscience meeting is always great fun for us, and it was especially true this year as we unveiled the third generation of our optogenetic prototype and actually did some experiments at our poster! Earlier this year we sponsored a student design effort to build a portable optogenetic rig using cholinergic ChR2 (Channelrhodopsin) transgenic fruitfles from our collaborator Stefan Pulver. We’ve been hard at work over the summer improving the prototype with two design cycles, and here is version 3.

We brought the prototype to SfN; Stefan brought the special flies. Here at Backyard Brains we believe in real-time posters, so if you came by, you would seen us explaining how the prototype worked while Stefan was busy preparing the fruitfly larva for recording. Below Nature reporter Ewen Callaway talks to Stefan as he tries to use our micro-rig.

Ewen subsequently wrote a nice blog post on our gear for the Nature News site, but the best treat of all for us was returning to “Neuropod,” the Nature Neuroscience podcast. We were on the podcast three years ago when we first tried to present our gear and nothing worked. But we kept hacking away, and now, with all our gear fully operational, we were happy to bring the first spikes recorded live on Neuropod!

[audio:|titles=Nature Neuroscience Podcast Dec 2011]

As astute listener may wonder why you only hear the standard cockroach leg spikes on the podcast. Where are the fruitfly muscle recordings? Weren’t we also talking about some optogenetic device? Show the data! We admit, it was still relatively early in the day when we spoke with Ewen, and Stefan was still trying to get his dissection right (he remarked the monocular microscope made the dissection difficult, and he would have preferred the gooseneck dissection lights to be longer. Noted for Gen4). But Stefan stayed focused, and at 2 PM Sunday afternoon we successfully recorded the critical piece of data: the electromyogram from the fruitfly muscle during presentation of blue light. It’s noisy, but in the recording below you can hear the increased activity from the muscle at ~2 seconds when Stefan turned on the blue light. The blue light caused the cholinergic motor neurons to depolarize, resulting in muscle contraction.

[audio:|titles=SFN Optogenetics Recording]

Expect us to release the designs for the micromanipulator (you could 3D print it yourself!) and LED control circuit in a month or so.

It was a busy SfN for us, as we also ran a symposium on “Low Cost Neuroscience” with our colleagues Bruce Johnson from Cornell, Jeff Wilson from Albion, a high school teacher from the D.C. area, Raddy Ramos from New York Institute of Technology, our friend Stefan, and our keynote speaker Ben Robbins, a 6th grader from Novi Meadows Middle School. Mr. Robbins taught the audience how to successfully do outreach to 5th graders. We don’t have access to age data of presenters at SfN, but we would venture to guess Mr. Robbins may have been the youngest presenter ever for the society.

Scientists, with their huge intellect and famous experiments, can sometimes be intimidating to approach. Thus, we were a bit cautious and sheepish when we asked Mr. Robbins if he would let us take a picture with him. Thankfully, he was cool with it.

Photo by Jeff Wilson

You can watch Mr. Robbins’ talk below in all its lo-fi hand held camera glory. Don’t worry, the shaking slows down about 20 seconds in.

Our good friend Moheb Costandi also wrote a detailed summary of the symposium for the Dana Foundation. Stay tuned in the months to come as we release more inventions!

Spikes on the Android!

While most of us were enjoying our relaxing summer vacations, our developer Nate was hard at work porting our Backyard Brains mobile application to the Android platform.  We have just released our first version to the Android Market, and Yes! it’s a free download.  We are happy to now add the android phones to our growing list of supported devices for Backyard Brains data analysis.

For those that are interested in helping out in the future development of application or just interested in learning JAVA, we have released the source code under the GNU General Public License (GPL) license. You can get access to all of our source code on Github:

This is an early release (0.1b), so it only provides limited capabilities for now. But it does the most important thing. It allows you to see Spikes on the Android! See photo below, (that’s Nate’s hand). Watch for updates in the Market Place, as we will soon be adding more functionality.

Don’t forget to install our application from Happy spikes!


NeuroProsthetic Simple Demo Added to Our Experiment Library

You asked, we listened. See our newest experiment!